PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038913
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 238aa    MW: 27173.5 Da    PI: 6.2279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038913genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ +  +G  +W+++++  g+ R++k+c++rw +yl
      Lus10038913 14 KGPWTAEEDRKLVNFIVTHGQCCWRAVPKLAGLCRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding49.88e-1669111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         + E+ l +d++ +lG++ W++Ia++++ gRt++++k++w+++
      Lus10038913  69 VLNESEERLVIDLHSRLGNR-WSKIAAELP-GRTDNEIKNHWNTH 111
                      55689***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-21562IPR009057Homeodomain-like
PROSITE profilePS5129415.441961IPR017930Myb domain
SuperFamilySSF466892.7E-2711108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002492.7E-141461IPR001005SANT/Myb domain
CDDcd001675.02E-101661No hitNo description
PROSITE profilePS5129425.80762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2363117IPR009057Homeodomain-like
SMARTSM007179.2E-1566114IPR001005SANT/Myb domain
PfamPF002495.0E-1469111IPR001005SANT/Myb domain
CDDcd001678.25E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDRKLVNFIV THGQCCWRAV PKLAGLCRCG KSCRLRWTNY  60
LRPDLKRGVL NESEERLVID LHSRLGNRWS KIAAELPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHKPLD DKVEETTDDH DVDCQEPQRG SCISDNDSFD ESRQFDSKPM STLGWSSELL  180
SADDHIDSTW RPWSDSEFKE LGSVGDHHLD DHHLSLLNGF NCFGEIDLLS DMSEHIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581058.15e-89PREDICTED: protein ODORANT1
SwissprotQ50EX61e-84ODO1_PETHY; Protein ODORANT1
TrEMBLV5K8K76e-87V5K8K7_9R
STRINGVIT_16s0022g01210.t018e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-83myb domain protein 20